Data Source

The following SRA datasets were used for lncRNA identification in turmeric tissues.

Run	Assay Type	BioProject	BioSample	Center Name	Experiment	Instrument	Library Name	LibraryLayout	LibrarySelection	LibrarySource	Organism	Platform	version	Sample Name	SRA Study	tissue
SRR29248951	RNA-Seq	PRJNA1099963	SAMN41531517	DR RAJENDRA PRASAD CENTRAL AGRICULTURAL UNIVERSITY	SRX24767211	Illumina NovaSeq 6000	NH_6M	PAIRED	PCR	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	NH-6	SRP511050	leaf
SRR29248952	RNA-Seq	PRJNA1099963	SAMN41531500	DR RAJENDRA PRASAD CENTRAL AGRICULTURAL UNIVERSITY	SRX24767210	Illumina NovaSeq 6000	NH_4M	PAIRED	PCR	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	NH_4 month	SRP511050	leaf
SRR12560783	RNA-Seq	PRJNA660606	SAMN15954062	INDIAN INSTITUTE OF SCIENCE EDUCATION AND RESEARCH BHOPAL	SRX9049243	Illumina NovaSeq 6000	CLT	PAIRED	cDNA	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	CL	SRP279557	Leaf
SRR15204660	RNA-Seq	PRJNA660606	SAMN15954062	INDIAN INSTITUTE OF SCIENCE EDUCATION AND RESEARCH BHOPAL	SRX11511165	Illumina NovaSeq 6000	CLT2	PAIRED	cDNA	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	CL	SRP279557	Leaf

Rhizome SRA Data

Run	Assay Type	BioProject	BioSample	Center Name	Experiment	Instrument	Library Name	LibraryLayout	LibrarySelection	LibrarySource	Organism	Platform	version	Sample Name	SRA Study	tissue
SRR13594120	RNA-Seq	PRJNA698442	SAMN17718725	INDIAN INSTITUTE OF SPICES RESEARCH	SRX9988628	Illumina HiSeq 2500	Sample 1	PAIRED	Reduced Representation	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	Curcuma longa	SRP304056	Rhizome
SRR13644832	RNA-Seq	PRJNA698442	SAMN17817303	INDIAN INSTITUTE OF SPICES RESEARCH	SRX10042028	Illumina HiSeq 2500	Sample 2	PAIRED	Reduced Representation	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	Curcuma longa (under nutrient stress)	SRP304056	Rhizome
SRR495223	RNA-Seq	PRJNA167150	SAMN00991726	GENOTYPIC TECHNOLOGY	SRX146854	Illumina Genome Analyzer IIx	Library A	PAIRED	unspecified	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	2	Turmeric Sample A	SRP012945	Rhizome
SRR495363	RNA-Seq	PRJNA167150	SAMN00991786	GENOTYPIC TECHNOLOGY	SRX146981	Illumina Genome Analyzer IIx	Library B	PAIRED	unspecified	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	2	Turmeric Sample B	SRP012945	Rhizome
SRR495364	RNA-Seq	PRJNA167150	SAMN00991787	GENOTYPIC TECHNOLOGY	SRX146982	Illumina Genome Analyzer IIx	Library C	PAIRED	unspecified	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	Turmeric Sample C	SRP012945	Rhizome
SRR4042181	RNA-Seq	PRJNA339387	SAMN05590269	SIKSHA O ANUSANDHAN UNIVERSITY	SRX2033300	NextSeq 500	cDNA_without treatment	PAIRED	cDNA	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	CL_Suv_10	SRP082351	Rhizome,Rhizome
SRR1930100	RNA-Seq	PRJNA270561	SAMN03267215	INDIAN INSTITUTE OF SPICES RESEARCH	SRX969036	Illumina HiSeq 1500	NaN	PAIRED	cDNA	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	Curcuma longa	SRP056557	Rhizome
SRR1777727	RNA-Seq	PRJNA273793	SAMN03296044	CENTRE OF BIOTECHNOLOGY, SIKSHA O ANUSANDHAN UNIVE	SRX857365	Illumina HiSeq 2500	ClPa48C	PAIRED	cDNA	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	ClPa48C	SRP052931	Rhizome
SRR1777726	RNA-Seq	PRJNA273793	SAMN03296043	CENTRE OF BIOTECHNOLOGY, SIKSHA O ANUSANDHAN UNIVE	SRX857364	Illumina HiSeq 2500	ClPa48T	PAIRED	cDNA	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	ClPa48T	SRP052931	Rhizome
SRR3928562	RNA-Seq	PRJNA324755	SAMN05214264	SIKSHA O ANUSANDHAN UNIVERSITY	SRX1829461	NextSeq 500	Normal cDNA Library	PAIRED	cDNA	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	Cl_Ked_6	SRP076257	Rhizome
SRR31970649	RNA-Seq	PRJNA1208215	SAMN46225544	CSIR-NEIST	SRX27325960	Illumina MiSeq	TL5	PAIRED	Restriction Digest	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	TL5	SRP556796	Rhizome
SRR31970650	RNA-Seq	PRJNA1208215	SAMN46225543	CSIR-NEIST	SRX27325959	Illumina MiSeq	TL4	PAIRED	Restriction Digest	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	TL4	SRP556796	Rhizome
SRR31970651	RNA-Seq	PRJNA1208215	SAMN46225542	CSIR-NEIST	SRX27325958	Illumina MiSeq	TL3	PAIRED	Restriction Digest	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	TL3	SRP556796	Rhizome
SRR31970652	RNA-Seq	PRJNA1208215	SAMN46225541	CSIR-NEIST	SRX27325957	Illumina MiSeq	TL2	PAIRED	Restriction Digest	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	TL2	SRP556796	Rhizome
SRR31970653	RNA-Seq	PRJNA1208215	SAMN46225540	CSIR-NEIST	SRX27325956	Illumina MiSeq	TL1	PAIRED	Restriction Digest	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	TL1	SRP556796	Rhizome
SRR31970654	RNA-Seq	PRJNA1208215	SAMN46225539	CSIR-NEIST	SRX27325955	Illumina MiSeq	TC5	PAIRED	Restriction Digest	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	TC5	SRP556796	Rhizome
SRR31970655	RNA-Seq	PRJNA1208215	SAMN46225538	CSIR-NEIST	SRX27325954	Illumina MiSeq	TC4	PAIRED	Restriction Digest	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	TC4	SRP556796	Rhizome
SRR31970656	RNA-Seq	PRJNA1208215	SAMN46225537	CSIR-NEIST	SRX27325953	Illumina MiSeq	TC3	PAIRED	Restriction Digest	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	TC3	SRP556796	Rhizome
SRR31970657	RNA-Seq	PRJNA1208215	SAMN46225548	CSIR-NEIST	SRX27325952	Illumina MiSeq	TL9	PAIRED	Restriction Digest	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	TL9	SRP556796	Rhizome
SRR31970658	RNA-Seq	PRJNA1208215	SAMN46225547	CSIR-NEIST	SRX27325951	Illumina MiSeq	TL8	PAIRED	Restriction Digest	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	TL8	SRP556796	Rhizome
SRR31970659	RNA-Seq	PRJNA1208215	SAMN46225546	CSIR-NEIST	SRX27325950	Illumina MiSeq	TL7	PAIRED	Restriction Digest	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	TL7	SRP556796	Rhizome
SRR31970660	RNA-Seq	PRJNA1208215	SAMN46225545	CSIR-NEIST	SRX27325949	Illumina MiSeq	TL6	PAIRED	Restriction Digest	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	TL6	SRP556796	Rhizome
SRR31970661	RNA-Seq	PRJNA1208215	SAMN46225536	CSIR-NEIST	SRX27325948	Illumina MiSeq	TC2	PAIRED	Restriction Digest	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	TC2	SRP556796	Rhizome
SRR31970662	RNA-Seq	PRJNA1208215	SAMN46225535	CSIR-NEIST	SRX27325947	Illumina MiSeq	TC1	PAIRED	Restriction Digest	TRANSCRIPTOMIC	Curcuma longa	ILLUMINA	1	TC1	SRP556796	Rhizome

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Data Source

Leaf SRA Data

Rhizome SRA Data